Here is a list of all class members with links to the classes they belong to:
- s -
- Sample() : RAND
- sampleAmongPop() : LCE_Cross
- SampleSeq() : RAND
- SampleSeqWithReciprocal() : RAND
- sampleWithinPop() : LCE_Cross
- save_simparams() : FHLogWriter
- ScrambleArrayUInt() : RAND
- Seed1 : RAND
- Seed2 : RAND
- seq() : ParamsParser
- sequence : TTDeletMutations_bitstring
- Service() : Service
- set() : bitstring, DataTable< T >, EventFileHandler< LCE >, FileHandler, Param, Patch, StatRecBase, StatRecorder< S >, StatServices, TMatrix, TraitFileHandler< TP >
- set_2L() : TTNeutralGenes
- set_age() : Patch
- set_allele() : TTNeutralGenes, TTQuanti
- set_allele_num() : TTNeutralGenes
- set_allele_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- set_buff() : BinaryStorageBuffer
- set_data() : bitstring
- set_effect() : TProtoDeletMutations_bitstring
- set_effects() : TProtoDeletMutations_bitstring, TTDeletMutations_bitstring
- set_effects_exp() : TProtoDeletMutations_bitstring
- set_effects_gamma() : TProtoDeletMutations_bitstring
- set_effects_lognorm() : TProtoDeletMutations_bitstring
- set_eVarianceSD() : TProtoQuanti
- set_event_name() : LifeCycleEvent
- set_ExecRank() : FileHandler
- set_extension() : FileHandler
- set_fit_model() : LCE_Selection_base
- set_gender() : TTDispersal
- set_GenerationOccurrence() : FileHandler
- set_geno_rate() : TT_BDMI
- set_genotype_value_additive() : TProtoQuanti
- set_genotype_value_dominance() : TProtoQuanti
- set_index() : TraitPrototype
- set_inherit_func_ptr() : TT_BDMI, TTDeletMutations_bitstring, TTNeutralGenes
- set_init_freq() : TProtoBDMI
- set_init_model() : TTNeutralGenes
- set_init_rate_fem() : TTDispersal
- set_init_rate_mal() : TTDispersal
- set_init_values() : TProtoQuanti
- set_isExtinct() : Patch
- set_isForward() : LCE_Disperse_base
- set_isGenerationPeriodic() : FileHandler
- set_isHaploid() : TT_BDMI
- set_isInputHandler() : FileHandler
- set_isMasterExec() : FileHandler
- set_isReplicatePeriodic() : FileHandler
- set_K() : Patch
- set_KFem() : Patch
- set_KMal() : Patch
- set_local_optima() : LCE_Selection_base
- set_locus_num() : TTNeutralGenes
- set_matrix_param() : LCE_Patch_Extinction
- set_multi() : FileHandler
- set_mut_func_ptr() : TTNeutralGenes
- set_mut_mean() : TTDispersal
- set_mut_model() : TTNeutralGenes
- set_mut_rate() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes
- set_mutation_func_ptr() : TT_BDMI, TTDeletMutations_bitstring
- set_mutation_matrix_decomposition() : TProtoQuanti
- set_nb_hmz_mutations() : TTDeletMutations_bitstring
- set_nb_htz_mutations() : TTDeletMutations_bitstring
- set_nb_locus() : TT_BDMI, TTDeletMutations_bitstring
- set_nb_mutations() : TTDeletMutations_bitstring
- set_OccMatrix() : FileHandler
- set_param() : ParamSet
- set_param_rate_of_change() : LCE_Selection_base
- set_parameters() : ParamManager
- set_paramset() : LifeCycleEvent, SimComponent
- set_paramsetFromCopy() : SimComponent
- set_path() : FileHandler
- set_phenotype() : TTQuanti
- set_pop_ptr() : FileHandler, FileServices, LifeCycleEvent, StatServices
- set_proto() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti
- set_recomb_rate() : TT_BDMI, TTNeutralGenes
- set_recomb_template() : TTDeletMutations_bitstring
- set_ReplicateOccurrence() : FileHandler
- set_sampling_params() : FileServices
- set_sel_model() : LCE_Selection_base
- set_sequence() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- set_service() : FileHandler, StatHandlerBase
- set_statService() : LCE_StatFH
- set_std_rate_of_change() : LCE_Selection_base
- set_trait() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- set_trait_value_func_ptr() : TProtoQuanti
- set_trait_value_noVE() : TProtoQuanti
- set_trait_value_VE() : TProtoQuanti
- set_transmit_rate() : TTWolbachia
- set_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- set_viability_func_ptr() : TT_BDMI, TTDeletMutations_bitstring
- set_write_fct() : TTNeutralGenesFH
- setAdltNeiGeneticDistance() : TTNeutralGenesSH
- setAdultAlleleFreq() : TTNeutralGenesSH
- setAdultDeletStats() : TTDeletMutBitstrSH
- setAdultHeterozygosity() : TTNeutralGenesSH
- setAdults_Theta() : TTNeutralGenesSH
- setAdultsCoaBetween() : TTNeutralGenesSH
- setAdultsCoaMatrix() : TTNeutralGenesSH
- setAdultsCoaWithin() : TTNeutralGenesSH
- setAdultsFstat() : TTNeutralGenesSH
- setAdultsFstat2() : TTNeutralGenesSH
- setAdultsFstatWeirCockerham() : TTNeutralGenesSH
- setAdultsFstBetween() : TTNeutralGenesSH
- setAdultsFstMatrix() : TTNeutralGenesSH
- setAdultsFstWithin() : TTNeutralGenesSH
- setAdultStats() : TTBDMI_SH, TTQuantiSH
- setAdultTable() : LCE_SelectionSH
- setAdultViab() : TTDeletMutBitstrSH
- setAge() : Individual
- setAlleleTables() : TTNeutralGenesSH
- setArg() : Param
- setArgString() : ParamManager
- setAtGeneration() : Param
- setBasename() : FileServices
- setBaseParameters() : LCE_Disperse_base
- setBasicLatticeMatrix() : LCE_Disperse_base
- setBounds() : Param
- setCoaMatrix() : TTNeutralGenesSH
- setCoaMatrixRecorders() : TTNeutralGenesSH
- setCompactOutputFormat() : StatServices
- setContinuousMutationModel() : TProtoQuanti
- setCurrentAge() : Metapop
- setCurrentGeneration() : Metapop, SimRunner
- setCurrentID() : Individual
- setCurrentReplicate() : Metapop, SimRunner
- setDataTable() : LCE_SelectionSH
- setDataTables() : TTQuantiSH
- setDefaultOutputFormat() : StatServices
- setDeletStats() : TTDeletMutBitstrSH
- setDiallelicMutationModel() : TProtoQuanti
- setDispMatrix() : LCE_Disperse_base
- setDominanceParameters() : TProtoQuanti
- setDxyRecorders() : TTNeutralGenesSH
- setEffectsFromInput() : TProtoDeletMutations_bitstring
- setElapsedTime() : SimRunner
- setFather() : Individual
- setFatherID() : Individual
- setFecundity() : Individual, LCE_Breed_base
- setFieldPrecision() : StatServices
- setFieldSeparator() : StatServices
- setFieldWidth() : StatServices
- setFileDescriptor() : BinaryDataSaver
- setFilename() : ParamManager
- setForFirstGeneration() : SimRunner
- setFormat() : FileMergerFH
- setFreqRecorders() : TTNeutralGenesSH
- setFreqRecordersPerPatch() : TTNeutralGenesSH
- setFst() : TTDeletMutBitstrSH
- setFst_li() : TTNeutralGenesSH
- setFstat() : TTNeutralGenesSH
- setFstat2() : TTNeutralGenesSH
- setFstat2Recorders() : TTNeutralGenesSH
- setFstatRecorders() : TTNeutralGenesSH
- setFstatWCRecorders() : TTNeutralGenesSH
- setFstatWeirCockerham() : TTNeutralGenesSH
- setFstatWeirCockerham_MS() : TTNeutralGenesSH
- setFstMatrix() : TTNeutralGenesSH
- setFstMatrixRecorders() : TTNeutralGenesSH
- setFuncPtr() : ParamUpdater< SC >
- setGeneration() : BinaryDataLoader
- setGenerations() : Metapop, SimRunner
- setGeneticMapParameters() : TTProtoWithMap
- setGenoFitnessValue() : TProtoBDMI
- setHandler() : StatRecorder< S >
- setHeteroTable() : TTNeutralGenesSH
- setHeterozygosity() : TTNeutralGenesSH
- setHo() : TTNeutralGenesSH
- setHo2() : TTNeutralGenesSH
- setHome() : Individual
- setHs() : TTNeutralGenesSH
- setHs2() : TTNeutralGenesSH
- setHt() : TTNeutralGenesSH
- setHt2() : TTNeutralGenesSH
- setID() : Individual, Patch
- setIndentityDispMatrix() : LCE_Disperse_base
- setIndPhenotype() : LCE_Breed_Quanti, LCE_QuantiModifier
- setInfectionStats() : TTWolbachiaSH
- setIsBounded() : Param
- setIsland_MigrantPool_Matrix() : LCE_Disperse_base
- setIsland_PropagulePool_Matrix() : LCE_Disperse_base
- setIsRequired() : Param, ParamSet
- setIsSelfed() : Individual
- setIsSet() : Param
- setKinClassCounter() : MPStatHandler
- setKinship() : MPStatHandler
- setLatticeAbsorbingMatrix() : LCE_Disperse_base
- setLatticeMatrix() : LCE_Disperse_base
- setLatticeReflectingMatrix() : LCE_Disperse_base
- setLatticeTorrusMatrix() : LCE_Disperse_base
- setLethalEquivalents() : TTDeletMutBitstrSH
- setLifeCycle() : SimRunner
- setLocalOptima() : LCE_Selection_base
- setLociDivCounter() : TTNeutralGenesSH
- setLookupTable() : GeneticMap
- setMainSim() : SIMenv
- setManager() : LCE_ParamUpdaterNotifier
- setMapIndex() : TTProtoWithMap
- setMatingSystem() : LCE_Breed_base
- setMeanFitness() : LCE_Selection_base
- setMeans() : LCE_Selection_base
- setMeanViability() : TTDeletMutBitstrSH
- setMode() : FileServices
- setMother() : Individual
- setMotherID() : Individual
- setMPImanager() : Metapop
- setMutationParameters() : TProtoQuanti
- setName() : Param, ParamSet, ParamsParser, StatRecBase
- setNeiGeneticDistance() : TTNeutralGenesSH
- setNeiGeneticDistanceRecorders() : TTNeutralGenesSH
- setNewGeneration() : Patch
- setNonRandom() : TProtoDispersal
- setNonSelectedTraitTable() : LCE_Breed_Selection
- setNumLociPerChromosome() : TTProtoWithMap
- setObsrvdExtinctionRate() : MPStatHandler
- setOcccurrence() : StatServices
- setOccurence() : LCE_StatServiceNotifier
- setOccurrences() : StatServices
- setOffsprgCoaBetween() : TTNeutralGenesSH
- setOffsprgCoaMatrix() : TTNeutralGenesSH
- setOffsprgCoaWithin() : TTNeutralGenesSH
- setOffsprgDeletStats() : TTDeletMutBitstrSH
- setOffsprgFstat() : TTNeutralGenesSH
- setOffsprgFstat2() : TTNeutralGenesSH
- setOffsprgFstBetween() : TTNeutralGenesSH
- setOffsprgFstMatrix() : TTNeutralGenesSH
- setOffsprgFstWithin() : TTNeutralGenesSH
- setOffsprgNeiGeneticDistance() : TTNeutralGenesSH
- setOffsprgStats() : TTBDMI_SH, TTQuantiSH
- setOffsprgTable() : LCE_SelectionSH
- setOffsprgViab() : TTDeletMutBitstrSH
- setOffspringAlleleFreq() : TTNeutralGenesSH
- setOffspringFstatWeirCockerham() : TTNeutralGenesSH
- setOffspringHeterozygosity() : TTNeutralGenesSH
- setOption() : MPFileHandler
- setOutputOption() : TTNeutralGenesFH, TTQuantiFH
- setOwner() : Param, ParamSet
- setParameters() : BinaryDataSaver, LCE_Aging, LCE_Breed, LCE_Breed_base, LCE_Breed_Disperse, LCE_Breed_Quanti, LCE_Breed_Selection, LCE_Breed_Selection_Disperse, LCE_Breed_Wolbachia, LCE_Cross, LCE_Disperse_ConstDisp, LCE_Disperse_EvolDisp, LCE_FileServicesNotifier, LCE_Init_BDMI, LCE_NtrlInit, LCE_ParamUpdaterNotifier, LCE_Patch_Extinction, LCE_QuantiInit, LCE_QuantiModifier, LCE_Regulation, LCE_Resize, LCE_SeedDisp, LCE_Selection_base, LCE_StatServiceNotifier, Metapop, SimComponent, TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia
- setParamPrefix() : LCE_Disperse_base
- setPatchCapacities() : Metapop
- setPatchFreq() : LCE_Init_BDMI
- setPatchNbr() : Metapop
- setPatchSizes() : Metapop
- setPedegreeCount() : MPStatHandler
- setPedigreeClass() : Individual
- setPopulation() : Metapop
- setPopulationFromSource() : Metapop
- setPopulationFromSourceInPreserveMode() : Metapop
- setPopulationParameters() : Metapop
- setPropaguleTargets() : LCE_Disperse_base
- setRandom() : TProtoDispersal
- setRecombinationMapFixed() : TTProtoWithMap
- setRecombinationMapNonRandom() : TTProtoWithMap
- setRecombinationMapRandom() : TTProtoWithMap
- setReducedDispMatrix() : LCE_Disperse_base
- setReducedMatricesBySex() : LCE_Disperse_base
- setReplicates() : Metapop, SimRunner
- setReproductiveStats() : MPStatHandler
- setReproScaledFitness_sum() : LCE_Breed_Selection
- setResolution() : GeneticMap
- setRootDir() : FileServices
- setScalingFactorAbsolute() : LCE_Selection_base
- setScalingFactorGlobal() : LCE_Selection_base
- setScalingFactorLocal() : LCE_Selection_base
- setScalingFactorMaxGlobal() : LCE_Selection_base
- setScalingFactorMaxLocal() : LCE_Selection_base
- setSelectionMatrix() : LCE_Selection_base
- setSelectionParameters() : TProtoDeletMutations_bitstring
- setSex() : Individual
- setSexRatio() : LCE_Breed_base
- setSibCoa() : TTNeutralGenesSH
- setSibStats() : TTNeutralGenesSH
- setSourceParameters() : Metapop
- setSpatialPattern() : LCE_Init_BDMI
- setStatOptions() : StatServices
- setStatRecorders() : LCE_SelectionSH, MPStatHandler, StatHandlerBase, TTBDMI_SH, TTDeletMutBitstrSH, TTDispersalSH, TTNeutralGenesSH, TTQuantiSH, TTWolbachiaSH
- setStats() : TTBDMI_SH, TTQuantiSH
- setStatsForDeletMutations() : TTDeletMutBitstrSH
- setStatsForDemography() : MPStatHandler
- setStatsForMigrants() : MPStatHandler
- setStatsForMigrantsPerPatch() : MPStatHandler
- setStatsForPop() : MPStatHandler
- setStatsForPopPerPatch() : MPStatHandler
- setSteppingStone1DMatrix() : LCE_Disperse_base
- setTrait() : Individual
- setTraits() : FileMergerFH
- setTraitValue() : Individual
- setType() : Param
- setUpdater() : Param
- setVal() : StatRecBase, StatRecorder< S >
- setVefromVa() : LCE_Breed_Quanti, LCE_QuantiModifier
- setViability() : TTDeletMutBitstrSH
- setViabStats() : TTDeletMutBitstrSH
- show_up() : DataTable< T >, Individual, Metapop, Param, ParamSet, Patch, TMatrix, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- showGenoTable() : TProtoBDMI
- SimBuilder() : SimBuilder
- SimComponent() : SimComponent
- SIMenv() : SIMenv
- SimRunner() : SimRunner
- size() : bitstring, DataTable< T >, Metapop, MPIenv, MPImanager, ParamSet, Patch
- sizeChange() : DataTable< T >
- split() : tstring
- splitExcludeEnclosedDelimiters() : tstring
- STAT_IT : StatHandlerBase
- stat_it : StatServices
- StatHandler() : StatHandler< SH >
- StatHandlerBase() : StatHandlerBase
- StatRecBase() : StatRecBase
- StatRecorder() : StatRecorder< S >
- StatServices() : StatServices
- step() : SimRunner
- stochasticFecundityGrowth() : LCE_Breed_Disperse
- stochasticLogisticGrowth() : LCE_Breed_Disperse
- store() : BinaryStorageBuffer
- store_data() : Individual, Metapop, StorableComponent, TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTWolbachia
- store_sizes() : DataTable< T >
- store_trait() : Metapop
- storeData() : BinaryDataSaver
- str2dble() : tstring
- str2int() : tstring
- str2uint() : tstring
- str2ulong() : tstring
- StreamParser() : StreamParser
- stripFormatString() : ParamManager
- subSamplePatch() : FileServices
- swap() : Patch
- swapPostDisp() : LCE_Disperse_base
- sym_matrix() : ParamsParser