Here is a list of all class members with links to the classes they belong to:
- g -
- Gamma() : RAND
- gammln() : RAND
- Gaussian() : RAND
- generatePedigree() : LCE_Cross
- GeneticMap() : GeneticMap
- get() : DataTable< T >, Metapop, Patch, TMatrix
- get_additive_genotype() : TTQuanti
- get_age() : Patch
- get_allele_model() : TProtoQuanti
- get_allele_num() : TProtoNeutralGenes, TTNeutralGenes
- get_allele_value() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- get_allele_values() : TProtoQuanti
- get_allParams() : ParamManager
- get_allRegisteredStats() : SimRunner
- get_backmutation_rate() : TProtoDeletMutations_bitstring
- get_current_event() : SimBuilder
- get_current_eventWithParameter() : SimBuilder
- get_current_trait() : SimBuilder
- get_current_traitWithParameter() : SimBuilder
- get_currentParams() : SimBuilder
- get_dims() : TMatrix
- get_dominance() : TProtoDeletMutations_bitstring, TProtoQuanti
- get_dominance_effects() : TProtoQuanti
- get_dominance_model() : TProtoDeletMutations_bitstring, TProtoQuanti
- get_effect() : TProtoDeletMutations_bitstring
- get_effects() : TProtoDeletMutations_bitstring
- get_env_var() : TProtoQuanti
- get_event_name() : LifeCycleEvent
- get_ExecRank() : FileHandler
- get_extension() : FileHandler
- get_filename() : FileHandler
- get_FileServices() : SimRunner
- get_firstRecord() : ParamManager
- get_fitness_scaling_factor() : TProtoDeletMutations_bitstring
- get_full_genotype() : TTQuanti
- get_GenerationOccurrence() : FileHandler
- get_genotype() : TProtoQuanti
- get_genotype_dominance_h() : TProtoQuanti
- get_genotype_dominance_k() : TProtoQuanti
- get_h2_isBroad() : TProtoQuanti
- get_h2_setTime() : TProtoQuanti
- get_harvest_size() : LCE_Patch_Extinction
- get_heritability() : TProtoQuanti
- get_hmz_atLocus() : TTDeletMutations_bitstring
- get_hs_continous() : TProtoDeletMutations_bitstring
- get_htz_atLocus() : TTDeletMutations_bitstring
- get_index() : TraitPrototype
- get_init_dist() : TProtoDispersal
- get_init_dist_params() : TProtoDispersal
- get_init_freq() : TProtoBDMI, TProtoDeletMutations_bitstring
- get_init_mode() : TProtoDispersal
- get_init_value() : TProtoQuanti
- get_inputParams() : ParamsParser
- get_isAlive() : MPStatHandler
- get_iscontinuous() : TProtoDeletMutations_bitstring
- get_isExtinct() : Patch
- get_isGenerationPeriodic() : FileHandler
- get_isInputHandler() : FileHandler
- get_isMasterExec() : FileHandler
- get_isReplicatePeriodic() : FileHandler
- get_K() : Patch
- get_KFem() : Patch
- get_KMal() : Patch
- get_LCE() : ComponentManager
- get_locus_num() : TProtoNeutralGenes, TTNeutralGenes
- get_mut_rate() : TProtoBDMI, TProtoDeletMutations_bitstring
- get_mutation_correlation() : TProtoQuanti
- get_name() : SimComponent
- get_nb_hmz_mutations() : TTDeletMutations_bitstring
- get_nb_htz_mutations() : TTDeletMutations_bitstring
- get_nb_locus() : TProtoBDMI, TProtoDeletMutations_bitstring, TProtoQuanti
- get_nb_mut_atLocus() : TTDeletMutations_bitstring
- get_nb_mutations() : TTDeletMutations_bitstring
- get_nb_traits() : TProtoQuanti
- get_nbSims() : ParamManager
- get_num_mut_diplo() : TT_BDMI
- get_num_mut_haplo() : TT_BDMI
- get_OccMatrix() : FileHandler
- get_param() : ParamSet
- get_parameter() : SimComponent
- get_parameter_value() : SimComponent
- get_params() : FileServices
- get_paramset() : ParamManager, SimComponent
- get_parent() : LCE_Breed_Disperse
- get_path() : FileHandler
- get_ploidy() : TProtoNeutralGenes, TTNeutralGenes
- get_pop() : SimRunner
- get_pop_ptr() : FileHandler, FileServices, LifeCycleEvent, StatHandlerBase, StatServices
- get_rank() : LifeCycleEvent
- get_ReplicateOccurrence() : FileHandler
- get_s_continous() : TProtoDeletMutations_bitstring
- get_seq_length() : TProtoQuanti
- get_sequence() : TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- get_service() : FileHandler, StatHandlerBase
- get_simRecords() : ParamManager
- get_stater() : TProtoNeutralGenes, TProtoQuanti
- get_StatServices() : SimRunner
- get_strength() : TProtoDeletMutations_bitstring
- get_trait() : ComponentManager
- get_trait_var() : TProtoQuanti
- get_type() : TProtoBDMI, TProtoDeletMutations_bitstring, TProtoDispersal, TProtoNeutralGenes, TProtoQuanti, TProtoWolbachia, TraitPrototype, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- getAdultSexRatio() : MPStatHandler
- getAdultsLetheq() : TTDeletMutBitstrSH
- getAdultsNumber() : Patch
- getAge() : Individual, StatRecBase
- getAimedPatch : LCE_Disperse_EvolDisp
- getAlleleCountTable() : TTNeutralGenesSH
- getAlleleFreqTable() : TTNeutralGenesSH
- getAllIndividuals() : Metapop
- getAllParams() : ParamSet
- getAllStats() : StatServices
- getArg() : Param, ParamSet
- getArg1() : StatRecBase
- getArg2() : StatRecBase
- getArgumentFromFile() : Param
- getArguments() : ParamsParser
- getBalpha() : TTDeletMutBitstrSH
- getBaseFileName() : FileServices
- getBlock() : tstring
- getBlockArgument() : ParamsParser
- getBound() : Param
- getBtheta() : TTDeletMutBitstrSH
- getBuffer() : BinaryDataLoader, BinaryStorageBuffer
- getBuffLength() : BinaryStorageBuffer
- getBytesOut() : BinaryStorageBuffer
- getClassWithinGroup() : DataTable< T >
- getCoa() : TTNeutralGenesSH
- getColumnView() : TMatrix
- getComponent() : ParamUpdater< SC >, ParamUpdaterBase
- getCopy() : Patch
- getCovar() : TTQuantiSH
- getCovarPerPatch() : TTQuantiSH
- getCurrentAge() : Metapop
- getCurrentGeneration() : Metapop, SIMenv, SimRunner
- getcurrentID() : Individual
- getCurrentOccurrence() : StatHandlerBase, StatServices
- getCurrentRankInLifeCycle() : SIMenv, SimRunner
- getCurrentReplicate() : Metapop, SIMenv, SimRunner
- getDeletAllFreq() : TTDeletMutBitstrSH
- getDeletAllHmz() : TTDeletMutBitstrSH
- getDeletAllHtz() : TTDeletMutBitstrSH
- getDeletAllPerGenome() : TTDeletMutBitstrSH
- getDemicExtinctionRate() : TTWolbachiaSH
- getDemicInfectionVar() : TTWolbachiaSH
- getDensity() : Patch
- getDispersalModel() : LCE_Disperse_base
- getDxy() : TTNeutralGenesSH
- getDxyAdultPerPatch() : TTNeutralGenesSH
- getDxyOffspringPerPatch() : TTNeutralGenesSH
- getDxyPerPatch() : TTNeutralGenesSH
- getEigenValue() : TTQuantiSH
- getEigenValuePerPatch() : TTQuantiSH
- getEigenVectorElt() : TTQuantiSH
- getEigenVectorEltPerPatch() : TTQuantiSH
- getEmigrantInPatch() : MPStatHandler
- getExternalFiles() : Param
- getFather() : Individual
- getFatherID() : Individual
- getFatherPtr() : LCE_Breed_base
- getFecundity() : Individual, LCE_Breed_base
- getFecWithHomePatchMate() : Individual
- getFecWithOtherPatchMate() : Individual
- getFemNumber() : MPStatHandler
- getFH() : LCE_StatServiceNotifier
- getFileDescriptor() : BinaryDataSaver
- getFirst() : StatServices
- getFirstReader() : FileServices
- getFirstRecPosition() : GeneticMap
- getFirstReplicateFileName() : FileServices
- getFirstRequiredAgeInLifeCycle() : SimBuilder
- getFirstWriter() : FileServices
- getFis() : TTNeutralGenesSH
- getFisWC() : TTNeutralGenesSH
- getFit() : TTNeutralGenesSH
- getFitness() : LCE_Selection_base, LCE_SelectionSH
- getFitnessAbsolute() : LCE_Selection_base
- getFitnessDirect() : LCE_Selection_base
- getFitnessFixedEffect() : LCE_Selection_base
- getFitnessMultivariateGaussian() : LCE_Selection_base
- getFitnessMultivariateGaussian_VE() : LCE_Selection_base
- getFitnessRelative() : LCE_Selection_base
- getFitnessUnivariateGaussian() : LCE_Selection_base
- getFitnessUnivariateGaussian_VE() : LCE_Selection_base
- getFitnessUnivariateQuadratic() : LCE_Selection_base
- getFitWC() : TTNeutralGenesSH
- getFixedDeletLoci() : TTDeletMutBitstrSH
- getFixedDeletLociPerPatch() : TTDeletMutBitstrSH
- getFixedFecundity() : LCE_Breed_base
- getFixLocGlobal() : TTNeutralGenesSH
- getFixLocLocal() : TTNeutralGenesSH
- getFreq() : TTBDMI_SH
- getFreqIcmp() : TTBDMI_SH
- getFst() : TTDeletMutBitstrSH, TTNeutralGenesSH
- getFst_ij() : TTNeutralGenesSH
- getFstWC() : TTNeutralGenesSH
- getGaussianFecundity() : LCE_Breed_base
- getGeneration() : BinaryDataLoader
- getGenerationCounter() : FileServices
- getGenerationReplicateFileName() : FileServices
- getGenerations() : Metapop, SIMenv, SimRunner
- getGenerationStatValues() : StatServices
- getGeneticMap() : GeneticMap
- getGenoFitnessDiplo() : TProtoBDMI
- getGenoFitnessHaplo() : TProtoBDMI
- getGlobalAlleleFreq() : TTNeutralGenesSH
- getGlobalFreqs() : TTNeutralGenesSH
- getGroup() : DataTable< T >
- getHeterosis() : TTDeletMutBitstrSH
- getHeteroTable() : TTNeutralGenesSH
- getHeterozygosity() : TTNeutralGenesSH
- getHo() : TTNeutralGenesSH
- getHome() : Individual
- getHs() : TTDeletMutBitstrSH, TTNeutralGenesSH
- getHsnei() : TTNeutralGenesSH
- getHt() : TTDeletMutBitstrSH, TTNeutralGenesSH
- getHtnei() : TTNeutralGenesSH
- getIcompatibleMatingFreq() : TTWolbachiaSH
- getID() : Individual, Patch
- getImigrateInPatch() : MPStatHandler
- getIndividualProtoype() : IndFactory
- getIsSelfed() : Individual
- getKolonisersInPatch() : MPStatHandler
- getLast() : StatServices
- getLastReader() : FileServices
- getLastWriter() : FileServices
- getLethalEquivalents() : TTDeletMutBitstrSH
- getLoad() : TTDeletMutBitstrSH
- getLocalMatings() : Individual
- getLocalRealizedFecundity() : Individual
- getLocusPositionTable() : GeneticMap
- getLogNormalFecundity() : LCE_Breed_base
- getMacroArgs() : ParamsParser
- getMacroParamValue() : ParamsParser
- getMacroSepParamChar() : ParamsParser
- getMalNumber() : MPStatHandler
- getMapIndex() : TTProtoWithMap
- getMatingProportion() : LCE_Breed_base
- getMatings() : Individual
- getMatingSystem() : LCE_Breed_base
- getMatrix() : Param, ParamSet
- getMaxFitness() : LCE_Selection_base
- getMaxPatchFitness() : LCE_Selection_base
- getMeanAlpha() : TTNeutralGenesSH
- getMeanAssignedFecundity() : MPStatHandler
- getMeanDispRate() : TTDispersalSH
- getMeanDispRateInPatch() : TTDispersalSH
- getMeanEmigrantPerPatch() : MPStatHandler
- getmeanFD() : TTDispersalSH
- getMeanFecundity() : LCE_Breed_base
- getMeanFecWithPatchMate() : TTDeletMutBitstrSH
- getMeanFemaleInfection_perPatch() : TTWolbachiaSH
- getMeanFemDispRate() : TTDispersalSH
- getMeanFitness() : LCE_Selection_base, LCE_SelectionSH
- getMeanImigrantPerPatch() : MPStatHandler
- getMeanInfection() : TTWolbachiaSH
- getMeanKolonisersPerPatch() : MPStatHandler
- getMeanKolonisersProportion() : MPStatHandler
- getMeanMalDispRate() : TTDispersalSH
- getMeanMaleInfection_perPatch() : TTWolbachiaSH
- getMeanMatings() : MPStatHandler
- getmeanMD() : TTDispersalSH
- getMeanMigrantRatio() : MPStatHandler
- getMeanNeiGeneticDistance() : TTNeutralGenesSH
- getmeanOFD() : TTDispersalSH
- getMeanOffsprgFemaleInfection_perPatch() : TTWolbachiaSH
- getMeanOffsprgInfection() : TTWolbachiaSH
- getMeanOffsprgMaleInfection_perPatch() : TTWolbachiaSH
- getmeanOMD() : TTDispersalSH
- getMeanPatchAge() : MPStatHandler
- getMeanPatchDensity() : MPStatHandler
- getMeanPatchDensityVariance() : MPStatHandler
- getMeanPatchFitness() : LCE_Selection_base, LCE_SelectionSH
- getMeanPatchSize() : MPStatHandler
- getMeanPatchSizePerSex() : MPStatHandler
- getMeanPhenot() : TTQuantiSH
- getMeanPhenotPerPatch() : TTQuantiSH
- getMeanResidantPerPatch() : MPStatHandler
- getMeanTheta() : TTNeutralGenesSH
- getMeanViability() : TTDeletMutBitstrSH
- getMigrationPatchBackward() : LCE_Disperse_base
- getMigrationPatchForward() : LCE_Disperse_base
- getMode() : FileServices
- getMother() : Individual
- getMotherID() : Individual
- getMultiArgs() : Param
- getMutationEffectBivariateDiallelic() : TProtoQuanti
- getMutationEffectBivariateGaussian() : TProtoQuanti
- getMutationEffectMultivariateGaussian() : TProtoQuanti
- getMutationEffectUnivariateDiallelic() : TProtoQuanti
- getMutationEffectUnivariateGaussian() : TProtoQuanti
- getName() : Param, ParamSet, StatRecBase
- getNbAllGlobal() : TTNeutralGenesSH
- getNbAllLocal() : TTNeutralGenesSH
- getNbCols() : TMatrix
- getNbRecorders() : StatHandlerBase
- getNbRows() : TMatrix
- getNeiGeneticDistance() : TTNeutralGenesSH
- getNewIndividual() : IndFactory
- getNewSimulation() : SIMenv
- getNumClasses() : DataTable< T >
- getNumGroups() : DataTable< T >
- getNumOccurrences() : StatHandlerBase, StatServices
- getNumStats() : StatServices
- getObsrvdExtinctionRate() : MPStatHandler
- getOccurrence() : StatHandlerBase, StatServices
- getOffFemNumber() : MPStatHandler
- getOffMalNumber() : MPStatHandler
- getOffsprgLetheq() : TTDeletMutBitstrSH
- getOffsprgMeanDispRate() : TTDispersalSH
- GetOffsprgSex : LCE_Breed_base
- getOffsprgSex() : LCE_Breed_base
- getOffsprgSexCloning() : LCE_Breed_base
- getOffsprgSexFixed() : LCE_Breed_base
- getOffsprgSexRandom() : LCE_Breed_base
- getOffsprgSexRatio() : MPStatHandler
- getOffsprgSexSelfing() : LCE_Breed_base
- getOwner() : Param
- getParameters() : ParamsParser
- getParams() : ParamUpdaterBase
- getParsedParameters() : ParamsParser
- getPatch() : Metapop
- getPatchAge() : MPStatHandler
- getPatchArray() : Metapop
- getPatchArraySize() : Metapop
- getPatchCapacities() : Metapop
- getPatchCapacity() : Metapop
- getPatchDisp_AF() : TTDispersalSH
- getPatchDisp_AM() : TTDispersalSH
- getPatchDisp_OF() : TTDispersalSH
- getPatchDisp_OM() : TTDispersalSH
- getPatchFreq() : TTBDMI_SH
- getPatchIcmp() : TTBDMI_SH
- getPatchKFem() : Metapop
- getPatchKMal() : Metapop
- getPatchLoad() : TTDeletMutBitstrSH
- getPatchNbr() : Metapop
- getPatchPtr() : Metapop
- getPatchSize() : MPStatHandler
- getPedigree() : FHPedigreeReader
- getPedigreeClass() : Individual
- getPedProp() : LCE_SelectionSH
- getPedProportion() : MPStatHandler
- getPoissonFecundity() : LCE_Breed_base
- getPop() : BinaryDataLoader
- getPopulationSize() : MPStatHandler
- getPrintAveragesOpt() : StatServices
- getPropaguleProb() : LCE_Disperse_base
- getPropaguleTarget() : LCE_Disperse_base
- getPrototypeClone() : IndFactory
- getQst() : TTQuantiSH
- getReader() : FileServices
- getRealizedFecundity() : Individual
- getRecLoci() : GeneticMap
- getReplicateCounter() : FileServices
- getReplicateFileName() : FileServices
- getReplicates() : Metapop, SIMenv, SimRunner
- getReplicateStatRecords() : StatServices
- getReproductiveVar() : MPStatHandler
- getResidantInPatch() : MPStatHandler
- getResolution() : GeneticMap
- getRootDir() : FileServices
- getRowView() : TMatrix
- getSampledPop() : FileServices
- getSegregatingDeletLoci() : TTDeletMutBitstrSH
- getSegregatingDeletLociPerPatch() : TTDeletMutBitstrSH
- getSex() : Individual
- getSibCoaMeans() : TTNeutralGenesSH
- getSibProportion() : MPStatHandler
- getSibProportions() : TTDeletMutBitstrSH, TTNeutralGenesSH
- getSim() : BinaryDataLoader
- getSkewPerPatch() : TTQuantiSH
- getSNPalleleFreqInPatch() : TTQuantiSH
- getSourceFileType() : Metapop
- getSourceName() : Metapop
- getSourceReplDigits() : Metapop
- getStatArg() : StatServices
- getStats() : StatHandlerBase
- getSurvival() : LCE_SelectionSH
- getTable() : DataTable< T >
- getTemporalArgs() : Param
- getTheta_FF() : TTNeutralGenesSH
- getTheta_FM() : TTNeutralGenesSH
- getTheta_MM() : TTNeutralGenesSH
- getTitle() : StatRecBase
- getTotByteRecorded() : BinaryStorageBuffer
- getTotMatings() : Individual
- getTotRealizedFecundity() : Individual
- getTrait() : Individual
- getTraitIndex() : IndFactory
- getTraitNumber() : Individual
- getTraitPrototype() : IndFactory
- getTraitPrototypes() : IndFactory
- getTraits() : Individual
- getTraitValue() : Individual
- getType() : Param
- getUpdater() : Param
- getUpdaters() : ParamSet
- getUpdatingDates() : Param
- getVa() : TTQuantiSH
- getValArray() : TMatrix
- getValue() : Param, ParamSet, TT_BDMI, TTDeletMutations_bitstring, TTDispersal, TTNeutralGenes, TTQuanti, TTrait, TTWolbachia
- getVaNoDominance() : TTQuantiSH
- getVaPerPatch() : TTQuantiSH
- getVariableMatrix() : Param
- getVarPatchFitness() : LCE_SelectionSH
- getVaWithDominance() : TTQuantiSH
- getVb() : TTQuantiSH
- getVg() : TTQuantiSH
- getViability() : TTDeletMutBitstrSH
- getVp() : TTQuantiSH
- getVpPerPatch() : TTQuantiSH
- getWeightedFst() : TTNeutralGenesSH
- getword_atIdx() : bitstring
- getword_atPos() : bitstring