Nemo: Class Members

Here is a list of all class members with links to the classes they belong to:

- _ -

__get_block() : tstring
_age : Individual , StatRecBase , Patch
_allele_model : TProtoQuanti
_allele_num : TTNeutralGenes , TProtoNeutralGenes
_allele_value : TProtoQuanti
_alleleCountTable : TTNeutralGenesSH
_alleleFreqTable : TTNeutralGenesSH
_allParams : ParamManager
_alpha_male : LCE_Breed_base
_arg : Param , LCE_StatServiceNotifier
_arg1 : StatRecBase
_arg2 : StatRecBase
_atGeneration : LCE_Cross , LCE_Resize
_averages : StatRecBase
_base_fitness : LCE_Selection_base
_basename : FileServices
_bit_count : bitstring
_bitpos : bitstring::reference
_bounds : Param
_breed_disperse : LCE_Breed_Disperse
_breed_func_ptr : LCE_Breed_Wolbachia
_breed_selection_disperse : LCE_Breed_Selection_Disperse
_buff : BinaryDataLoader , BinaryDataSaver , BinaryStorageBuffer
_by_proportion : LCE_Patch_Extinction
_by_size : LCE_Patch_Extinction
_bytes_in : BinaryStorageBuffer
_bytes_out : BinaryStorageBuffer
_capacities : Patch
_children : StatServices
_chrsmFirstLocusPosition : TProtoQuanti
_classes : DataTable< T >
_coa_matrix : TTNeutralGenesSH
_cols : StatRecBase , TMatrix
_comp_cmd : BinaryDataSaver
_comp_ext : BinaryDataSaver
_components : ComponentManager
_componentUpdater : UpdaterServices
_containers : Patch
_continuous_effects : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_covar : TTQuantiSH
_cumulClassSizes : DataTable< T >
_cumulGroupSizes : DataTable< T >
_current_age : StatHandlerBase
_current_filename : FileHandler
_current_generation : FileHandler , StatHandlerBase
_current_replicate : FileHandler , StatHandlerBase
_current_sim : BinaryDataLoader
_currentAge : Metapop
_currentGeneration : Metapop , SimRunner
_currentParams : SimBuilder
_currentReplicate : SimRunner , Metapop
_currentTraits : SimBuilder
_D : TTNeutralGenesSH
_data : bitstring
_deletAllCount : TTDeletMutBitstrSH
_deletFreqTable : TTDeletMutBitstrSH
_deletHmzLoci : TTDeletMutBitstrSH
_deletHtzLoci : TTDeletMutBitstrSH
_diffs : LCE_Selection_base
_dir : BinaryDataSaver , LCE_StatServiceNotifier
_disp_model : LCE_Disperse_base
_disp_propagule_prob : LCE_Disperse_base
_DispMatrix : LCE_Disperse_base
_dist_p1 : TProtoDeletMutations_bitstring
_dist_p2 : TProtoDeletMutations_bitstring
_do_fill : LCE_Resize
_do_flush : LCE_Resize
_do_inherit : LCE_Breed_base
_do_postexec : SimRunner
_do_regulate : LCE_Resize
_doAmongPop : LCE_Cross
_doInitMutation : TTQuanti , TProtoQuanti
_dominance : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_dominance_model : TProtoDeletMutations_bitstring
_doReplace : LCE_Cross
_doRun : SimRunner
_doWithinPop : LCE_Cross
_effects : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_effects_bivar : TProtoQuanti
_effects_multivar : TProtoQuanti
_eigval : TTQuantiSH
_eigvect : TTQuantiSH
_endTime : SimRunner
_eval : TProtoQuanti , TTQuantiSH
_eVar : TTQuantiSH
_eVariance : LCE_Selection_base , TTQuanti , TProtoQuanti
_evec : TTQuantiSH
_evect : TProtoQuanti
_event_name : LifeCycleEvent
_ExecRank : FileHandler
_extension : FileHandler
_extinction_threshold : LCE_Patch_Extinction
_extrate : TTWolbachiaSH
_father : Individual
_fatherID : Individual
_fdisp_trait_link : LCE_Disperse_EvolDisp
_fdispIdx : TTDispersalSH
_fec_cost : LCE_Breed_Wolbachia
_fecundity : Individual
_fem_cost : LCE_Disperse_EvolDisp
_fem_rate : LCE_Disperse_base
_FHLinkedEvent : EventFileHandler< LCE >
_FHLinkedTrait : TraitFileHandler< TP >
_FHLinkedTraitIndex : TraitFileHandler< TP >
_fileHandler : LCE_StatServiceNotifier
_filename : BinaryDataLoader
_FileServices : SimRunner
_fis : TTNeutralGenesSH
_fis_WC : TTNeutralGenesSH
_fit : TTNeutralGenesSH
_fit_WC : TTNeutralGenesSH
_fitness : LCE_Selection_base
_fitness_model : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_fitness_scaling_factor : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_FitnessFixModel : LCE_Selection_base
_fix_loc_global : TTNeutralGenesSH
_fix_loc_local : TTNeutralGenesSH
_fixed_disp_rate : LCE_Disperse_EvolDisp
_fixloc : TTDeletMutBitstrSH
_fixLocPerPatch : TTDeletMutBitstrSH
_Fmean : TTWolbachiaSH
_Fpedigree : LCE_Selection_base
_freq : TTDeletMutBitstrSH
_Fst : TTDeletMutBitstrSH
_fst : TTNeutralGenesSH
_fst_matrix : TTNeutralGenesSH
_fst_W1 : TTNeutralGenesSH
_fst_W2 : TTNeutralGenesSH
_fst_WC : TTNeutralGenesSH
_fst_WH : TTNeutralGenesSH
_G : TTQuantiSH
_gen : BinaryDataLoader
_gender : TTDispersal , TProtoDispersal
_generation : BinaryDataSaver
_GenerationOccurrence : FileHandler , StatHandlerBase
_generations : LCE_Resize , Metapop , SimRunner
_genITER : LCE_Resize
_genomic_mut_rate : TTDeletMutations_bitstring
_genomic_mutation_rate : TTQuanti , TProtoQuanti
_genoTable : TTQuantiSH
_get_numFemOffspring : LCE_Breed_Disperse
_get_numMalOffspring : LCE_Breed_Disperse
_getFitness : LCE_Selection_base
_getMutationValues : TTQuanti
_getRawFitness : LCE_Selection_base
_getStat : StatRecorder< S >
_getStatOneArg : StatRecorder< S >
_getStatTwoArg : StatRecorder< S >
_globalAlleleFreq : TTNeutralGenesSH
_groups : DataTable< T >
_gsl_mutation_matrix : TProtoQuanti
_gsl_selection_matrix : LCE_Selection_base
_harvest_dist_shape : LCE_Patch_Extinction
_harvest_dist_stdev : LCE_Patch_Extinction
_harvest_distribution : LCE_Patch_Extinction
_harvest_proportion : LCE_Patch_Extinction
_harvest_size : LCE_Patch_Extinction
_harvest_size_varies : LCE_Patch_Extinction
_hmz : TTDeletMutations_bitstring
_Hmz : TTDeletMutBitstrSH
_Ho : TTDeletMutBitstrSH
_ho : TTNeutralGenesSH
_home : Individual
_Hs : TTDeletMutBitstrSH
_hs : TTNeutralGenesSH
_hsnei : TTNeutralGenesSH
_Ht : TTDeletMutBitstrSH
_ht : TTNeutralGenesSH
_htnei : TTNeutralGenesSH
_htz : TTDeletMutations_bitstring
_id : Individual
_ID : Patch
_in_pop : BinaryDataLoader
_incomp_cost : LCE_Breed_Wolbachia
_ind_cntr : LCE_Selection_base
_index : StatRecBase , TraitPrototype
_infected_fec : LCE_Breed_Wolbachia
_inherit : TTQuanti
_inherit_func_ptr : TTDeletMutations_bitstring , TTNeutralGenes , TProtoNeutralGenes
_init_dist : TProtoDispersal
_init_dist_param : TProtoDispersal
_init_freq : TTDeletMutations_bitstring , TProtoDeletMutations_bitstring
_init_model : TTNeutralGenes , TProtoNeutralGenes
_init_random : TProtoDispersal
_init_rate_fem : TTDispersal , TProtoDispersal
_init_rate_mal : TTDispersal , TProtoDispersal
_init_value : TTQuanti , TProtoQuanti
_init_values : LCE_QuantiInit
_inoculum_size : LCE_Breed_Wolbachia
_inoculum_time : LCE_Breed_Wolbachia
_inputParams : ParamManager , ParamsParser
_is_absolute : LCE_Selection_base
_is_infected : TTWolbachia
_is_local : LCE_Selection_base
_isBounded : Param
_isContinuousEffect : TTDeletMutBitstrSH
_isExtinct : Patch
_isForward : LCE_Disperse_base
_isGenerationPeriodic : FileHandler
_isInputHandler : FileHandler
_isMasterExec : FileHandler
_isPeriodic : BinaryDataSaver
_isReplicatePeriodic : FileHandler
_isRequired : Param , ParamSet
_isSet : Param , ParamSet
_isTemporal : Param
_K : Patch
_KFem : Patch
_KMal : Patch
_LCE_Templates : ComponentManager
_LCELinkedTraitIndex : LifeCycleEvent
_LCELinkedTraitType : LifeCycleEvent
_len : BinaryStorageBuffer
_length : DataTable< T > , TMatrix
_letheq : LCE_Selection_base , TTDeletMutBitstrSH
_LifeCycle : SimBuilder
_loader : Metapop
_local_optima : LCE_Selection_base
_locus_num : TTNeutralGenes , TProtoNeutralGenes
_logfile : SimRunner
_logWriter : FileServices
_make_offspring : LCE_Breed_Disperse
_mal_cost : LCE_Disperse_EvolDisp
_mal_rate : LCE_Disperse_base
_manager : LCE_ParamUpdaterNotifier
_mating_males : LCE_Breed_base
_mating_proportion : LCE_Breed_base
_mating_system : LCE_Breed_base
_matings : Individual
_max_fitness : LCE_Selection_base
_mdisp_trait_link : LCE_Disperse_EvolDisp
_mdispIdx : TTDispersalSH
_mean_alpha : TTNeutralGenesSH
_mean_fecundity : LCE_Breed_base
_mean_fitness : LCE_Selection_base
_mean_theta : TTNeutralGenesSH
_meanD : TTNeutralGenesSH
_meanFemDisp : TTDispersalSH
_meanG : TTQuantiSH
_meanGenLength : SimRunner
_meanMalDisp : TTDispersalSH
_meanOffFemDisp : TTDispersalSH
_meanOffMalDisp : TTDispersalSH
_meanP : TTQuantiSH
_meanReplElapsedTime : SimRunner
_meanViab : TTDeletMutBitstrSH
_Mmean : TTWolbachiaSH
_mode : FileServices , SimRunner
_model : LCE_Breed_Wolbachia
_mother : Individual
_motherID : Individual
_mpimgr : Metapop
_mut_mean : TProtoDispersal , TTDispersal
_mut_model : TTNeutralGenes , TProtoNeutralGenes
_mut_rate : TProtoDeletMutations_bitstring , TTDispersal , TProtoDispersal , TProtoNeutralGenes , TTNeutralGenes , TTDeletMutations_bitstring
_mutate_func_ptr : TTNeutralGenes , TProtoNeutralGenes
_mutation_correlation : TProtoQuanti
_mutation_func_ptr : TTDeletMutations_bitstring , TProtoQuanti
_mutation_matrix : TProtoQuanti
_mutation_model : TProtoDeletMutations_bitstring
_mutation_sigma : TProtoQuanti
_my_mpi_manager : SimRunner
_myComponent : ParamUpdater< SC >
_myOwner : ParamSet , Param
_myProto : TTDispersal , TTQuanti
_myUpdater : Param
_myUpdaterFunction : ParamUpdater< SC >
_name : Param , ParamSet , StatRecBase
_nb_age_class : Patch
_nb_all_global : TTNeutralGenesSH
_nb_all_local : TTNeutralGenesSH
_nb_chromosome : TProtoQuanti
_nb_hmz_mutations : TTDeletMutations_bitstring
_nb_htz_mutations : TTDeletMutations_bitstring
_nb_locus : TTDeletMutations_bitstring , TTQuanti , TProtoQuanti , TProtoDeletMutations_bitstring
_nb_mutations : TTDeletMutations_bitstring
_nb_trait : TTQuantiSH , LCE_Selection_base
_nb_traits : TTQuanti , TProtoQuanti
_nbLociPerChrsm : TProtoQuanti
_ncols : StatHandlerBase
_nDam : LCE_Cross
_new_sim : BinaryDataLoader
_nOffspring : LCE_Cross
_npatch : LCE_Disperse_base
_nrows : StatHandlerBase
_nSire : LCE_Cross
_nTraits : LCE_QuantiInit
_num_colonizers : LCE_Breed_Disperse
_observers : Service
_occurrence : LCE_StatServiceNotifier , StatServices
_offset_table : BinaryDataLoader , BinaryDataSaver
_ordering : StatRecBase
_output_option : TTQuantiFH
_params : FileServices , ParamSet , ParamUpdaterBase
_paramSet : SimComponent , ParamManager
_paramUpdater : UpdaterServices
_ParamUpdaterManager : SimRunner
_parsedParams : ParamsParser
_patch2keep : LCE_Resize
_patchBackup : LCE_Resize
_patchK : Metapop
_patchKfem : Metapop
_patchKmal : Metapop
_patchNbr : Metapop
_patchSizes : Metapop
_path : FileHandler
_pcovar : TTQuantiSH
_ped_prop : MPStatHandler
_pedigreeClass : Individual
_peigval : TTQuantiSH
_peigvect : TTQuantiSH
_pExtractor : BinaryDataLoader
_phe : LCE_Selection_base
_phenoTable : TTQuantiSH
_phenotype : TTDispersal , TTDeletMutations_bitstring
_phenotypes : TTQuanti
_ploidy : TTNeutralGenes , TProtoNeutralGenes
_pmeanG : TTQuantiSH
_pmeanP : TTQuantiSH
_pop : StatHandlerBase , FileHandler
_popPtr : FileServices , LifeCycleEvent , StatServices
_postexec_script : SimRunner
_PropaguleTargets : LCE_Disperse_base
_protoIndividual : IndFactory
_protoTraits : IndFactory
_pVa : TTQuantiSH
_pVp : TTQuantiSH
_rand_size_fct : LCE_Patch_Extinction
_rate : TTWolbachiaFH
_reader : TProtoDeletMutations_bitstring
_readers : FileServices
_realizedFecundity : Individual
_recLociPositionTable : TProtoQuanti
_recomb_map : TProtoQuanti
_recomb_mean : TTDeletMutations_bitstring
_recomb_positions : TProtoQuanti
_recomb_rate : TTNeutralGenes , TTDeletMutations_bitstring , TProtoQuanti , TProtoDeletMutations_bitstring , TProtoNeutralGenes
_recomb_template : TTNeutralGenes , TTDeletMutations_bitstring
_recorders : StatHandler< SH >
_rep_filename : FileServices
_ReplicateOccurrence : FileHandler
_replicates : Metapop , SimRunner
_requiredAge : Metapop
_res1 : LCE_Selection_base
_root_dir : FileServices
_rows : StatRecBase , TMatrix
_rSites : TTDeletMutations_bitstring
_scaling_factor : LCE_Selection_base
_sd_fecundity : LCE_Breed_base
_segrloc : TTDeletMutBitstrSH
_segrLocPerPatch : TTDeletMutBitstrSH
_selection_matrix : LCE_Selection_base
_selection_variance : LCE_Selection_base
_selectTraitDimension : LCE_Selection_base
_seq_length : TTQuanti , TProtoQuanti
_service : LCE_FileServicesNotifier , LCE_StatServiceNotifier , FileHandler , StatHandlerBase
_set_effects_func : TProtoDeletMutations_bitstring
_setAge : LCE_Resize
_setAtGeneration : Param
_setScalingFactor : LCE_Selection_base
_setStat : StatRecorder< S >
_sex : Individual
_SHLinkedEvent : EventStatHandler< LCE, SH >
_SHLinkedTrait : TraitStatHandler< TP, SH >
_SHLinkedTraitIndex : TraitStatHandler< TP, SH >
_sib_coa : TTNeutralGenesSH
_sib_prop : TTNeutralGenesSH , MPStatHandler
_SibProps : TTDeletMutBitstrSH
_simElapsedTime : SimRunner
_simRecords : ParamManager
_sites : TTDeletMutations_bitstring
_size : bitstring
_sizes : DataTable< T > , Patch
_sname : ParamsParser
_source : Metapop
_source_filetype : Metapop
_source_generation : Metapop
_source_load : Metapop
_source_name : Metapop
_source_preserve : Metapop
_source_replicate_digits : Metapop
_source_replicates : Metapop
_source_required_age : Metapop
_source_start_at_replicate : Metapop
_startTime : SimRunner
_statArg : StatServices
_stater : LCE_Selection_base
_statHandler : Metapop , LCE_StatServiceNotifier
_stats : TProtoQuanti , TProtoDispersal , TProtoDeletMutations_bitstring , StatHandlerBase , TProtoWolbachia , TProtoNeutralGenes
_statService : LCE_StatFH
_StatServices : SimRunner
_strength : TProtoDeletMutations_bitstring , TTDeletMutations_bitstring
_subParams : Param
_superChrsmLength : TProtoQuanti
_survival : LCE_Selection_base
_table : DataTable< T >
_table_set_age : TTQuantiSH , TTNeutralGenesSH
_table_set_gen : TTQuantiSH , TTNeutralGenesSH
_table_set_repl : TTQuantiSH , TTNeutralGenesSH
_tar_cmd : BinaryDataSaver
_tar_ext : BinaryDataSaver
_temporalArgs : Param
_temporalParams : ParamManager
_thePop : SimRunner
_times : TTWolbachiaFH
_title : StatRecBase
_totRecombEventsMean : TProtoQuanti
_trait : TTWolbachiaSH , TTDispersalSH
_trait_nb : Individual
_TraitsIndex : IndFactory
_transmit_rate : TProtoWolbachia , TTWolbachia
_TTidx : TTWolbachiaSH
_TTrait_Templates : ComponentManager
_type : TTDispersal , TProtoNeutralGenes , TTNeutralGenes , TTDeletMutations_bitstring , TProtoDispersal , Param
_ul : bitstring
_uncomp_cmd : BinaryDataSaver
_updaters : UpdaterServices
_Va : TTQuantiSH
_val : StatRecBase , TMatrix
_var : TTWolbachiaSH
_var_reprod_success : MPStatHandler
_Vb : TTQuantiSH
_viability : TTDeletMutBitstrSH
_viability_func_ptr : TProtoDeletMutations_bitstring , TTDeletMutations_bitstring
_Vp : TTQuantiSH
_vPatch : Metapop
_word : bitstring::reference
_words : bitstring
_writer : TProtoQuanti , TProtoDeletMutations_bitstring , LCE_Breed_Wolbachia
_writers : FileServices , TProtoNeutralGenes
_ws : TProtoQuanti , TTQuantiSH
_Xtion_rate : LCE_Patch_Extinction