TraitFileHandler< TP > Class Template Reference

Template class for the trait's FileHandler. More...

#include <filehandler.h>

Inheritance diagram for TraitFileHandler< TP >:

Collaboration diagram for TraitFileHandler< TP >:

List of all members.

Public Member Functions
	TraitFileHandler (TP *trait_proto, const char *ext)
virtual	~TraitFileHandler ()
virtual void	FHwrite ()=0
	Default behavior of the class, called by Handler::update().
virtual void	FHread (string &filename)=0
	Default input function.
virtual void	set (bool rpl_per, bool gen_per, int rpl_occ, int gen_occ, int rank, string path, TP *trait_proto)
Protected Attributes
TP *	_FHLinkedTrait
int	_FHLinkedTraitIndex

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Detailed Description

template<class TP>
class TraitFileHandler< TP >

Template class for the trait's FileHandler.

Constructor links to a given trait prototype. The pointer and index of the trait prototype are stored in the class. They can be accessd through the _FHLinkedTrait and _FHLinkedTraitIndex members to get the stats.

Definition at line 195 of file filehandler.h.

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Constructor & Destructor Documentation

template<class TP>

TraitFileHandler< TP >::TraitFileHandler	(	TP *	trait_proto,
		const char *	ext
	)

Definition at line 210 of file filehandler.h.

                                                                                           :
FileHandler(ext), _FHLinkedTrait(trait_proto), _FHLinkedTraitIndex(trait_proto->get_index())
{ }

template<class TP>

virtual TraitFileHandler< TP >::~TraitFileHandler

(

)

[inline, virtual]

Definition at line 201 of file filehandler.h.

{}

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Member Function Documentation

template<class TP>

virtual void TraitFileHandler< TP >::FHread

(

string &

filename

)

[pure virtual]

Default input function.

Loads a pop from the genotypes read from the input file.

Implements FileHandler.

Implemented in TTDeletMutBitstrFH, TTQuantiFH, and TTNeutralGenesFH.

template<class TP>

virtual void TraitFileHandler< TP >::FHwrite

(

)

[pure virtual]

Default behavior of the class, called by Handler::update().

Implements FileHandler.

Implemented in TTDeletMutBitstrFH, TTQuantiFH, and TTNeutralGenesFH.

template<class TP>

void TraitFileHandler< TP >::set	(	bool	rpl_per,
		bool	gen_per,
		int	rpl_occ,
		int	gen_occ,
		int	rank,
		string	path,
		TP *	trait_proto
	)		[virtual]

Definition at line 214 of file filehandler.h.

References FileHandler::set().

Referenced by TProtoNeutralGenes::loadFileServices(), and TProtoDeletMutations_bitstring::loadFileServices().

{
  FileHandler::set(rpl_per, gen_per, rpl_occ, gen_occ,rank, path);
  _FHLinkedTrait = trait_proto;
  _FHLinkedTraitIndex = trait_proto->get_index();
}

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Member Data Documentation

template<class TP>

TP* TraitFileHandler< TP >::_FHLinkedTrait [protected]

Definition at line 197 of file filehandler.h.

template<class TP>

int TraitFileHandler< TP >::_FHLinkedTraitIndex [protected]

Definition at line 198 of file filehandler.h.

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The documentation for this class was generated from the following file:

• filehandler.h