Nemo  2.3.56
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
TProtoDeletMutations_bitstring Member List

This is the complete list of members for TProtoDeletMutations_bitstring, including all inherited members.

_back_mutation_rateTProtoDeletMutations_bitstringprivate
_chrsmLengthTTProtoWithMapprotected
_continuous_effectsTProtoDeletMutations_bitstringprivate
_dist_p1TProtoDeletMutations_bitstringprivate
_dist_p2TProtoDeletMutations_bitstringprivate
_dominanceTProtoDeletMutations_bitstringprivate
_dominance_modelTProtoDeletMutations_bitstringprivate
_effectsTProtoDeletMutations_bitstringprivate
_fitness_modelTProtoDeletMutations_bitstringprivate
_fitness_scaling_factorTProtoDeletMutations_bitstringprivate
_indexTraitPrototypeprotected
_inherit_func_ptrTProtoDeletMutations_bitstringprivate
_init_freqTProtoDeletMutations_bitstringprivate
_isRegisteredTTProtoWithMapprivate
_lociMapPositionsTTProtoWithMapprotected
_mapTTProtoWithMapstatic
_mapIndexTTProtoWithMapprotected
_mapResolutionTTProtoWithMapprotected
_mut_rateTProtoDeletMutations_bitstringprivate
_mutation_modelTProtoDeletMutations_bitstringprivate
_nb_locusTProtoDeletMutations_bitstringprivate
_numChromosomeTTProtoWithMapprotected
_numLociTTProtoWithMapprotected
_numLociPerChrmsmTTProtoWithMapprotected
_paramPrefixTTProtoWithMapprivate
_paramSetSimComponentprotected
_readerTProtoDeletMutations_bitstringprivate
_recombRateTTProtoWithMapprotected
_recombRatePerChrmsmTTProtoWithMapprotected
_set_effects_funcTProtoDeletMutations_bitstringprivate
_statsTProtoDeletMutations_bitstringprivate
_strengthTProtoDeletMutations_bitstringprivate
_totRecombEventsMeanTTProtoWithMapprotected
_viability_func_ptrTProtoDeletMutations_bitstringprivate
_writerTProtoDeletMutations_bitstringprivate
add_parameter(Param *param)SimComponentinlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd)SimComponentinlinevirtual
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater)SimComponentinlinevirtual
addGeneticMapParameters(string prefix)TTProtoWithMap
areGeneticMapParamSet(string prefix)TTProtoWithMap
clone()TProtoDeletMutations_bitstringinlinevirtual
get_backmutation_rate()TProtoDeletMutations_bitstringinline
get_dominance()TProtoDeletMutations_bitstringinline
get_dominance_model()TProtoDeletMutations_bitstringinline
get_effect(unsigned int at, unsigned int loc)TProtoDeletMutations_bitstringinline
get_effects() constTProtoDeletMutations_bitstringinline
get_fitness_scaling_factor()TProtoDeletMutations_bitstringinline
get_hs_continous()TProtoDeletMutations_bitstringinline
get_index()TraitPrototypeinlinevirtual
get_init_freq()TProtoDeletMutations_bitstringinline
get_iscontinuous()TProtoDeletMutations_bitstringinline
get_mut_rate()TProtoDeletMutations_bitstringinline
get_name()SimComponentinlinevirtual
get_nb_locus()TProtoDeletMutations_bitstringinline
get_parameter(std::string name)SimComponentinlinevirtual
get_parameter_value(std::string name)SimComponentinlinevirtual
get_paramset()SimComponentinlinevirtual
get_s_continous()TProtoDeletMutations_bitstringinline
get_strength()TProtoDeletMutations_bitstringinline
get_type() constTProtoDeletMutations_bitstringinlinevirtual
getMapIndex()TTProtoWithMapinline
has_parameter(std::string name)SimComponentinlinevirtual
hatch()TProtoDeletMutations_bitstringvirtual
inherit_free(sex_t SEX, bitstring *seq, bitstring **parent)TProtoDeletMutations_bitstringinline
inherit_low(sex_t SEX, bitstring *seq, bitstring **parent)TProtoDeletMutations_bitstringinline
init()TProtoDeletMutations_bitstringinlinevirtual
isRecombinationFree(string prefix)TTProtoWithMap
loadFileServices(FileServices *loader)TProtoDeletMutations_bitstringvirtual
loadStatServices(StatServices *loader)TProtoDeletMutations_bitstringvirtual
loadUpdaters(UpdaterServices *loader)SimComponentinlinevirtual
recombine(unsigned long indID)TTProtoWithMapstatic
recordRandomMap()TTProtoWithMap
registerGeneticMap()TTProtoWithMap
reset()TProtoDeletMutations_bitstringinlinevirtual
reset_effect_table()TProtoDeletMutations_bitstring
reset_recombination_pointers()TTProtoWithMap
resetParameterFromSource(std::string param, SimComponent *cmpt)TProtoDeletMutations_bitstringvirtual
retrieve_data(BinaryStorageBuffer *reader)TProtoDeletMutations_bitstringvirtual
set_effect(unsigned int at, unsigned int loc, float val)TProtoDeletMutations_bitstringinline
set_effects()TProtoDeletMutations_bitstring
set_effects_exp()TProtoDeletMutations_bitstringinline
set_effects_gamma()TProtoDeletMutations_bitstringinline
set_effects_lognorm()TProtoDeletMutations_bitstringinline
set_index(int idx)TraitPrototypeinlinevirtual
set_paramset(ParamSet *paramset)SimComponentinlinevirtual
set_paramset(std::string name, bool required, SimComponent *owner)SimComponentinlinevirtual
set_paramsetFromCopy(const ParamSet &PSet)SimComponentinlinevirtual
setEffectsFromInput()TProtoDeletMutations_bitstring
setGeneticMapParameters(string prefix)TTProtoWithMap
setMapIndex(unsigned int idx)TTProtoWithMapinline
setNumLociPerChromosome(string param_name)TTProtoWithMap
setParameters()TProtoDeletMutations_bitstringvirtual
setRecombinationMapFixed()TTProtoWithMap
setRecombinationMapNonRandom(vector< vector< double > > *lociPositions)TTProtoWithMap
setRecombinationMapRandom()TTProtoWithMap
setSelectionParameters()TProtoDeletMutations_bitstring
SimComponent()SimComponentinline
store_data(BinaryStorageBuffer *saver)TProtoDeletMutations_bitstringvirtual
TProtoDeletMutations_bitstring()TProtoDeletMutations_bitstring
TProtoDeletMutations_bitstring(const TProtoDeletMutations_bitstring &T)TProtoDeletMutations_bitstring
TTProtoWithMap()TTProtoWithMapinline
TTProtoWithMap(const TTProtoWithMap &TP)TTProtoWithMap
unregisterFromGeneticMap()TTProtoWithMap
write_effects_to_parameter()TProtoDeletMutations_bitstring
~SimComponent()SimComponentinlinevirtual
~StorableComponent()StorableComponentinlinevirtual
~TProtoDeletMutations_bitstring()TProtoDeletMutations_bitstring
~TTProtoWithMap()TTProtoWithMapvirtual

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