StatServices Class Reference

The Service class used to manage the StatHandler objects. More...

#include <statservices.h>

Inheritance diagram for StatServices:

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Collaboration diagram for StatServices:

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List of all members.

Public Types
typedef std::list < StatHandlerBase * > ::const_iterator	stat_it
Public Member Functions
	StatServices ()
virtual	~StatServices ()
virtual bool	init ()
	Inits internals.
Metapop *	get_pop_ptr ()
void	set_pop_ptr (Metapop *pop)
void	set (std::string &str, unsigned int occ)
unsigned int	getOccurrence ()
void	setOcccurrence (unsigned int value)
std::string &	getStatArg ()
void	printStatHeaders (std::ofstream &FH, unsigned int order)
void	printStatValue (std::ofstream &FH, unsigned int i, unsigned int j)
	Prints the stat values to the '.txt' output file.
void	printStatAverage (std::ofstream &FH, unsigned int i)
void	setStatAverage ()
std::list< StatRecBase * >	getAllStats ()
stat_it	getFirst ()
stat_it	getLast ()
unsigned int	getStatRecIndex (unsigned int i)
virtual void	notify ()
	Notifies all observers to update their state.
virtual void	load (SimComponent *sc)
	tell the SimComponent to load its stat handlers
virtual void	attach (StatHandlerBase *SH)
	attach the StatHandler to the current list (_children) of the StatServices
virtual void	reset ()
	clear the list of StatHandler
Private Attributes
Metapop *	_popPtr
std::list< StatHandlerBase * >	_children
std::string	_statArg
unsigned int	_occurrence

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Detailed Description

The Service class used to manage the StatHandler objects.

Definition at line 44 of file statservices.h.

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Member Typedef Documentation

typedef std::list< StatHandlerBase* >::const_iterator StatServices::stat_it

Definition at line 58 of file statservices.h.

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Constructor & Destructor Documentation

StatServices::StatServices

(

)

[inline]

Definition at line 60 of file statservices.h.

: _popPtr(0), _occurrence(0) { }

virtual StatServices::~StatServices

(

)

[inline, virtual]

Definition at line 62 of file statservices.h.

{ }

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Member Function Documentation

void StatServices::attach

(

StatHandlerBase *

SH

)

[virtual]

attach the StatHandler to the current list (_children) of the StatServices

Parameters:

SH

the StatHandler

Definition at line 99 of file statservices.cc.

Referenced by TProtoWolbachia::loadStatServices(), TProtoNeutralGenes::loadStatServices(), TProtoDeletMutations_bitstring::loadStatServices(), LCE_StatServiceNotifier::loadStatServices(), Metapop::loadStatServices(), and LCE_Selection_base::loadStatServices().

{
  Service::attach(SH);
  _children.push_back(SH);
  SH->set_service(this);
}

Metapop* StatServices::get_pop_ptr

(

)

[inline]

Definition at line 66 of file statservices.h.

Referenced by StatHandlerBase::get_pop_ptr().

{return _popPtr;}

list< StatRecBase * > StatServices::getAllStats

(

)

Definition at line 202 of file statservices.cc.

Referenced by SimRunner::get_allRegisteredStats().

{
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  list<StatRecBase*> allStats, stats;
  
  while(HIT != _children.end()) {
        stats = (*HIT)->getStats();
        allStats.insert(allStats.end(), stats.begin(), stats.end());
        HIT++;
  }
  
  return allStats;
}

stat_it StatServices::getFirst

(

)

[inline]

Definition at line 92 of file statservices.h.

{return _children.begin();}

stat_it StatServices::getLast

(

)

[inline]

Definition at line 94 of file statservices.h.

{return _children.end();}

unsigned int StatServices::getOccurrence

(

)

[inline]

Definition at line 72 of file statservices.h.

Referenced by LCE_StatServiceNotifier::execute(), LCE_StatFH::FHwrite(), StatHandlerBase::getOccurrence(), and LCE_StatFH::PrintStat_byGen().

{return _occurrence;}

std::string& StatServices::getStatArg

(

)

[inline]

Definition at line 76 of file statservices.h.

{return _statArg;}

unsigned int StatServices::getStatRecIndex

(

unsigned int

i

)

Definition at line 189 of file statservices.cc.

Referenced by LCE_StatFH::FHwrite(), and LCE_StatFH::PrintStat_byGen().

{
  list< StatHandlerBase* >::iterator el;
  unsigned int index = 0;
  //find the first statHandler that has registered statRecorders and has computed some stats:
  for(el = _children.begin(); el != _children.end(); el++)
    if((index = (*el)->getStatRecIndex(i)) != 0) break;

  return index;
}

bool StatServices::init

(

)

[virtual]

Inits internals.

Implements Service.

Definition at line 44 of file statservices.cc.

Referenced by SimRunner::init_components().

{
  list< StatHandlerBase* >::iterator HIT;
  
  HIT = _children.begin();

  //first init the stat handlers -> will define the dims of the stat tables
  while(HIT != _children.end()) {
        (*HIT)->init();
        HIT++;
  }
  
  istringstream stats(_statArg);
  std::string arg;
  std::list<std::string> args;
  
  //extract the stat options from the string read in the init file
  while(stats>>arg) args.push_back(arg);
        
  std::list<std::string>::iterator token = args.begin();
  
  bool is_set = false;
  
  while(token != args.end()) {
        
        HIT = _children.begin();
        
        is_set = false;
        
        while(HIT != _children.end() && !is_set) {
          is_set |= (*HIT)->setStatRecorders( (*token) );
          HIT++;
        }

        if(!is_set) {
          error("the string \"%s\" is not a valid stat option\n",(*token).c_str());
          return false;
        }
        
        token++;
  }
  
  
  return true;
}

void StatServices::load

(

SimComponent *

sc

)

[virtual]

tell the SimComponent to load its stat handlers

Parameters:

sc

the SimComponent

Implements Service.

Definition at line 92 of file statservices.cc.

Referenced by SimRunner::register_component().

{
  sc->loadStatServices(this);
}

void StatServices::notify

(

)

[virtual]

Notifies all observers to update their state.

Reimplemented from Service.

Definition at line 108 of file statservices.cc.

Referenced by LCE_StatServiceNotifier::execute().

{
#ifdef _DEBUG_
  message("StatServices::notify (%i): ",( !(SIMenv::MainSim->getCurrentGeneration() % _occurrence)  
                                         || SIMenv::MainSim->getCurrentGeneration() == 1 ));
  fflush(stdout);
#endif
  //we automatically save first and last generations
  if( !(SIMenv::MainSim->getCurrentGeneration() % _occurrence)  || SIMenv::MainSim->getCurrentGeneration() == 1 )
    Service::notify();
#ifdef _DEBUG_
  message("\n");
#endif
}

void StatServices::printStatAverage	(	std::ofstream &	FH,
		unsigned int	i
	)

Definition at line 165 of file statservices.cc.

Referenced by LCE_StatFH::PrintStat_byGen().

{
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  while(HIT != _children.end()) {
        (*HIT)->print_average(FH,i);
        HIT++;
  }
}

void StatServices::printStatHeaders	(	std::ofstream &	FH,
		unsigned int	order
	)

Definition at line 141 of file statservices.cc.

Referenced by LCE_StatFH::FHwrite(), and LCE_StatFH::PrintStat_byGen().

{
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  while(HIT != _children.end()) {
        (*HIT)->print_headers(FH,order);
        HIT++;
  }
}

void StatServices::printStatValue	(	std::ofstream &	FH,
		unsigned int	i,
		unsigned int	j
	)

Prints the stat values to the '.txt' output file.

Parameters:

	FH	the file output stream
	i	the generation index in the stat tables (row)
	j	the replicate indes in the stat tables (column)

Definition at line 153 of file statservices.cc.

Referenced by LCE_StatFH::FHwrite().

{
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  while(HIT != _children.end()) {
        (*HIT)->print_value(FH,i,j);
        HIT++;
  }
}

void StatServices::reset

(

)

[virtual]

clear the list of StatHandler

Reimplemented from Service.

Definition at line 125 of file statservices.cc.

Referenced by SimRunner::reset_services().

{
  Service::reset();
  
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  while(HIT != _children.end()) {
        (*HIT)->reset();
        HIT++;
  }
  
  _children.clear();
}

void StatServices::set	(	std::string &	str,
		unsigned int	occ
	)			[inline]

Definition at line 70 of file statservices.h.

Referenced by LCE_StatServiceNotifier::loadStatServices().

{_statArg = str; _occurrence = occ;}

void StatServices::set_pop_ptr

(

Metapop *

pop

)

[inline]

Definition at line 68 of file statservices.h.

Referenced by SimRunner::init_components().

{_popPtr=pop;}

void StatServices::setOcccurrence

(

unsigned int

value

)

[inline]

Definition at line 74 of file statservices.h.

{_occurrence = value;}

void StatServices::setStatAverage

(

)

Definition at line 177 of file statservices.cc.

Referenced by LCE_StatFH::PrintStat_byGen().

{
  list< StatHandlerBase* >::iterator HIT = _children.begin();
  
  while(HIT != _children.end()) {
        (*HIT)->setAverage();
        HIT++;
  }
}

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Member Data Documentation

std::list< StatHandlerBase* > StatServices::_children [private]

Definition at line 50 of file statservices.h.

Referenced by attach(), getAllStats(), getFirst(), getLast(), getStatRecIndex(), init(), printStatAverage(), printStatHeaders(), printStatValue(), reset(), and setStatAverage().

unsigned int StatServices::_occurrence [private]

Definition at line 54 of file statservices.h.

Referenced by getOccurrence(), notify(), set(), and setOcccurrence().

Metapop* StatServices::_popPtr [private]

Definition at line 48 of file statservices.h.

Referenced by get_pop_ptr(), and set_pop_ptr().

std::string StatServices::_statArg [private]

Definition at line 52 of file statservices.h.

Referenced by getStatArg(), init(), and set().

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The documentation for this class was generated from the following files:

• statservices.h
• statservices.cc