_base_fitness | LCE_Selection_base | protected |
_diffs | LCE_Selection_base | private |
_do_change_local_opt | LCE_Selection_base | private |
_eVariance | LCE_Selection_base | protected |
_event_name | LifeCycleEvent | protected |
_fitness | LCE_Selection_base | protected |
_FitnessFixModel | LCE_Selection_base | private |
_Fpedigree | LCE_Selection_base | private |
_getFitness | LCE_Selection_base | protected |
_getRawFitness | LCE_Selection_base | protected |
_gsl_selection_matrix | LCE_Selection_base | private |
_ind_cntr | LCE_Selection_base | protected |
_is_absolute | LCE_Selection_base | protected |
_is_local | LCE_Selection_base | protected |
_LCELinkedTraitIndex | LifeCycleEvent | protected |
_LCELinkedTraitType | LifeCycleEvent | protected |
_letheq | LCE_Selection_base | protected |
_local_optima | LCE_Selection_base | private |
_max_fitness | LCE_Selection_base | protected |
_mean_fitness | LCE_Selection_base | protected |
_paramSet | SimComponent | protected |
_phe | LCE_Selection_base | private |
_popPtr | LifeCycleEvent | protected |
_rate_of_change_is_std | LCE_Selection_base | private |
_rate_of_change_local_optima | LCE_Selection_base | private |
_res1 | LCE_Selection_base | private |
_scaling_factor | LCE_Selection_base | protected |
_selection_matrix | LCE_Selection_base | private |
_selection_variance | LCE_Selection_base | protected |
_SelectionModels | LCE_Selection_base | protected |
_selectTraitDimension | LCE_Selection_base | protected |
_set_std_rate_at_generation | LCE_Selection_base | private |
_setNewLocalOptima | LCE_Selection_base | protected |
_setScalingFactor | LCE_Selection_base | protected |
_stater | LCE_Selection_base | protected |
_std_rate_reference_patch | LCE_Selection_base | private |
_survival | LCE_Selection_base | protected |
_TraitIndices | LCE_Selection_base | protected |
_Traits | LCE_Selection_base | protected |
_writer | LCE_Selection_base | protected |
add_parameter(Param *param) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
addAgeClass() | LCE_Selection_base | inlinevirtual |
addPhenotypicSD(unsigned int deme, double *stDev) | LCE_Selection_base | |
attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
changeLocalOptima() | LCE_Selection_base | |
clone() | LCE_Selection_base | inlinevirtual |
doViabilitySelection(sex_t SEX, age_idx AGE, Patch *patch, unsigned int p) | LCE_Selection_base | |
execute() | LCE_Selection_base | virtual |
get_event_name() | LifeCycleEvent | inlinevirtual |
get_name() | SimComponent | inlinevirtual |
get_parameter(std::string name) | SimComponent | inlinevirtual |
get_parameter_value(std::string name) | SimComponent | inlinevirtual |
get_paramset() | SimComponent | inlinevirtual |
get_pop_ptr() | LifeCycleEvent | inlinevirtual |
get_rank() | LifeCycleEvent | inlinevirtual |
getFitness(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
getFitnessAbsolute(Individual *ind, unsigned int patch) | LCE_Selection_base | |
getFitnessDirect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
getFitnessFixedEffect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
getFitnessMultivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessMultivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessRelative(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
getFitnessUnivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessUnivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessUnivariateQuadratic(Individual *ind, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getMaxFitness(age_idx age) | LCE_Selection_base | |
getMaxPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
getMeanFitness(age_idx age) | LCE_Selection_base | |
getMeanPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
has_parameter(std::string name) | SimComponent | inlinevirtual |
init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
LCE_Breed_Selection | LCE_Selection_base | friend |
LCE_Selection_base() | LCE_Selection_base | |
LCE_SelectionFH | LCE_Selection_base | friend |
LCE_SelectionSH | LCE_Selection_base | friend |
LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
loadFileServices(FileServices *loader) | LCE_Selection_base | virtual |
loadStatServices(StatServices *loader) | LCE_Selection_base | virtual |
loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
removeAgeClass() | LCE_Selection_base | inlinevirtual |
requiredAgeClass() | LCE_Selection_base | inlinevirtual |
resetCounters() | LCE_Selection_base | |
resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Selection_base | inlinevirtual |
set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
set_fit_model() | LCE_Selection_base | |
set_local_optima() | LCE_Selection_base | |
set_param_rate_of_change() | LCE_Selection_base | |
set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
set_sel_model() | LCE_Selection_base | |
set_std_rate_of_change() | LCE_Selection_base | |
setLocalOptima() | LCE_Selection_base | |
setMeanFitness(age_idx age) | LCE_Selection_base | inline |
setMeans(unsigned int tot_ind) | LCE_Selection_base | |
setParameters() | LCE_Selection_base | virtual |
setScalingFactorAbsolute(age_idx age, unsigned int p) | LCE_Selection_base | inline |
setScalingFactorGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorMaxGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorMaxLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
setSelectionMatrix() | LCE_Selection_base | |
SimComponent() | SimComponent | inline |
~LCE_Selection_base() | LCE_Selection_base | virtual |
~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
~SimComponent() | SimComponent | inlinevirtual |