Nemo
2.3.56
Simulate forward-in-time genetic evolution in a spatially explicit, individual-based stochastic simulator
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This is the complete list of members for LCE_Breed_base, including all inherited members.
_alpha_male | LCE_Breed_base | private |
_do_inherit | LCE_Breed_base | private |
_event_name | LifeCycleEvent | protected |
_LCELinkedTraitIndex | LifeCycleEvent | protected |
_LCELinkedTraitType | LifeCycleEvent | protected |
_mating_males | LCE_Breed_base | private |
_mating_proportion | LCE_Breed_base | private |
_mating_system | LCE_Breed_base | private |
_mean_fecundity | LCE_Breed_base | protected |
_paramSet | SimComponent | protected |
_popPtr | LifeCycleEvent | protected |
_sd_fecundity | LCE_Breed_base | private |
add_parameter(Param *param) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
addAgeClass()=0 | LifeCycleEvent | pure virtual |
attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
checkCloning(Patch *thePatch) | LCE_Breed_base | inline |
checkMatingCondition(Patch *thePatch) | LCE_Breed_base | inline |
CheckMatingConditionFuncPtr | LCE_Breed_base | private |
checkNoSelfing(Patch *thePatch) | LCE_Breed_base | inline |
checkPolygyny(Patch *thePatch) | LCE_Breed_base | inline |
checkSelfing(Patch *thePatch) | LCE_Breed_base | inline |
clone()=0 | LifeCycleEvent | pure virtual |
do_breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | inline |
DoBreedFuncPtr | LCE_Breed_base | private |
doInheritance() | LCE_Breed_base | inline |
execute()=0 | LifeCycleEvent | pure virtual |
FecundityFuncPtr | LCE_Breed_base | private |
fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
get_event_name() | LifeCycleEvent | inlinevirtual |
get_name() | SimComponent | inlinevirtual |
get_parameter(std::string name) | SimComponent | inlinevirtual |
get_parameter_value(std::string name) | SimComponent | inlinevirtual |
get_paramset() | SimComponent | inlinevirtual |
get_pop_ptr() | LifeCycleEvent | inlinevirtual |
get_rank() | LifeCycleEvent | inlinevirtual |
getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inlinevirtual |
getFecundity(unsigned int patch) | LCE_Breed_base | inline |
getFecundity(double mean) | LCE_Breed_base | inline |
getFixedFecundity(double mean) | LCE_Breed_base | inline |
getGaussianFecundity(double mean) | LCE_Breed_base | inline |
getLogNormalFecundity(double mean) | LCE_Breed_base | inline |
getMatingProportion() | LCE_Breed_base | inline |
getMatingSystem() | LCE_Breed_base | inline |
getMeanFecundity(unsigned int patch) | LCE_Breed_base | inline |
GetOffsprgSex | LCE_Breed_base | private |
getOffsprgSex() | LCE_Breed_base | inline |
getOffsprgSexCloning() | LCE_Breed_base | inline |
getOffsprgSexFixed() | LCE_Breed_base | |
getOffsprgSexRandom() | LCE_Breed_base | inline |
getOffsprgSexSelfing() | LCE_Breed_base | inline |
getPoissonFecundity(double mean) | LCE_Breed_base | inline |
has_parameter(std::string name) | SimComponent | inlinevirtual |
init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
LCE_Breed_base() | LCE_Breed_base | |
LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
loadFileServices(FileServices *loader)=0 | SimComponent | pure virtual |
loadStatServices(StatServices *loader)=0 | SimComponent | pure virtual |
loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
makeOffspring(Individual *ind) | LCE_Breed_base | |
MatingFuncPtr | LCE_Breed_base | private |
NonWrightFisherPopulation() | LCE_Breed_base | |
partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
PopModelFuncPtr | LCE_Breed_base | protected |
random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
removeAgeClass()=0 | LifeCycleEvent | pure virtual |
requiredAgeClass()=0 | LifeCycleEvent | pure virtual |
resetParameterFromSource(std::string param, SimComponent *cmpt)=0 | SimComponent | pure virtual |
set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
setFecundity() | LCE_Breed_base | |
setMatingSystem() | LCE_Breed_base | |
setParameters() | LCE_Breed_base | virtual |
setSexRatio() | LCE_Breed_base | |
SimComponent() | SimComponent | inline |
WrightFisherPopulation() | LCE_Breed_base | |
~LCE_Breed_base() | LCE_Breed_base | inlinevirtual |
~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
~SimComponent() | SimComponent | inlinevirtual |