_alpha_male | LCE_Breed_base | private |
_base_fitness | LCE_Selection_base | protected |
_breed_selection | LCE_Breed_Selection | private |
_diffs | LCE_Selection_base | private |
_do_change_local_opt | LCE_Selection_base | private |
_do_inherit | LCE_Breed_base | private |
_eVariance | LCE_Selection_base | protected |
_event_name | LifeCycleEvent | protected |
_fitness | LCE_Selection_base | protected |
_FitnessFixModel | LCE_Selection_base | private |
_Fpedigree | LCE_Selection_base | private |
_getFitness | LCE_Selection_base | protected |
_getRawFitness | LCE_Selection_base | protected |
_gsl_selection_matrix | LCE_Selection_base | private |
_ind_cntr | LCE_Selection_base | protected |
_is_absolute | LCE_Selection_base | protected |
_is_local | LCE_Selection_base | protected |
_LCELinkedTraitIndex | LifeCycleEvent | protected |
_LCELinkedTraitType | LifeCycleEvent | protected |
_letheq | LCE_Selection_base | protected |
_local_optima | LCE_Selection_base | private |
_mating_males | LCE_Breed_base | private |
_mating_proportion | LCE_Breed_base | private |
_mating_system | LCE_Breed_base | private |
_max_fitness | LCE_Selection_base | protected |
_mean_fecundity | LCE_Breed_base | protected |
_mean_fitness | LCE_Selection_base | protected |
_nb_trait | LCE_Breed_Selection | private |
_nonSelectedTraitIndices | LCE_Breed_Selection | private |
_paramSet | SimComponent | protected |
_phe | LCE_Selection_base | private |
_popPtr | LifeCycleEvent | protected |
_rate_of_change_is_std | LCE_Selection_base | private |
_rate_of_change_local_optima | LCE_Selection_base | private |
_res1 | LCE_Selection_base | private |
_scaling_factor | LCE_Selection_base | protected |
_sd_fecundity | LCE_Breed_base | private |
_selection_matrix | LCE_Selection_base | private |
_selection_variance | LCE_Selection_base | protected |
_SelectionModels | LCE_Selection_base | protected |
_selectTraitDimension | LCE_Selection_base | protected |
_set_std_rate_at_generation | LCE_Selection_base | private |
_setNewLocalOptima | LCE_Selection_base | protected |
_setScalingFactor | LCE_Selection_base | protected |
_stater | LCE_Selection_base | protected |
_std_rate_reference_patch | LCE_Selection_base | private |
_survival | LCE_Selection_base | protected |
_TraitIndices | LCE_Selection_base | protected |
_Traits | LCE_Selection_base | protected |
_writer | LCE_Selection_base | protected |
add_parameter(Param *param) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd) | SimComponent | inlinevirtual |
add_parameter(std::string Name, param_t Type, bool isRequired, bool isBounded, double low_bnd, double up_bnd, ParamUpdaterBase *updater) | SimComponent | inlinevirtual |
addAgeClass() | LCE_Breed_Selection | inlinevirtual |
addPhenotypicSD(unsigned int deme, double *stDev) | LCE_Selection_base | |
attach_trait(string trait) | LifeCycleEvent | inlinevirtual |
breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
breed_cloning(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | |
changeLocalOptima() | LCE_Selection_base | |
checkCloning(Patch *thePatch) | LCE_Breed_base | inline |
checkMatingCondition(Patch *thePatch) | LCE_Breed_base | inline |
CheckMatingConditionFuncPtr | LCE_Breed_base | private |
checkNoSelfing(Patch *thePatch) | LCE_Breed_base | inline |
checkPolygyny(Patch *thePatch) | LCE_Breed_base | inline |
checkSelfing(Patch *thePatch) | LCE_Breed_base | inline |
clone() | LCE_Breed_Selection | inlinevirtual |
do_breed(Individual *mother, Individual *father, unsigned int LocalPatch) | LCE_Breed_base | inline |
do_breed_selection_FecFitness(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
do_breed_selection_OffSurvival(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
do_breed_selection_WrightFisher_1sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
do_breed_selection_WrightFisher_2sex(Patch *patch, unsigned int patchID, unsigned int *cntr) | LCE_Breed_Selection | |
DoBreedFuncPtr | LCE_Breed_base | private |
doInheritance() | LCE_Breed_base | inline |
doViabilitySelection(sex_t SEX, age_idx AGE, Patch *patch, unsigned int p) | LCE_Selection_base | |
execute() | LCE_Breed_Selection | virtual |
FecundityFuncPtr | LCE_Breed_base | private |
fullMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
fullSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
get_event_name() | LifeCycleEvent | inlinevirtual |
get_name() | SimComponent | inlinevirtual |
get_parameter(std::string name) | SimComponent | inlinevirtual |
get_parameter_value(std::string name) | SimComponent | inlinevirtual |
get_paramset() | SimComponent | inlinevirtual |
get_pop_ptr() | LifeCycleEvent | inlinevirtual |
get_rank() | LifeCycleEvent | inlinevirtual |
getFatherPtr(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inlinevirtual |
getFecundity(unsigned int patch) | LCE_Breed_base | inline |
getFecundity(double mean) | LCE_Breed_base | inline |
getFitness(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
getFitnessAbsolute(Individual *ind, unsigned int patch) | LCE_Selection_base | |
getFitnessDirect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
getFitnessFixedEffect(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | inline |
getFitnessMultivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessMultivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessRelative(Individual *ind, unsigned int patch) | LCE_Selection_base | inline |
getFitnessUnivariateGaussian(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessUnivariateGaussian_VE(Individual *offsprg, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFitnessUnivariateQuadratic(Individual *ind, unsigned int patch, unsigned int trait) | LCE_Selection_base | |
getFixedFecundity(double mean) | LCE_Breed_base | inline |
getGaussianFecundity(double mean) | LCE_Breed_base | inline |
getLogNormalFecundity(double mean) | LCE_Breed_base | inline |
getMatingProportion() | LCE_Breed_base | inline |
getMatingSystem() | LCE_Breed_base | inline |
getMaxFitness(age_idx age) | LCE_Selection_base | |
getMaxPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
getMeanFecundity(unsigned int patch) | LCE_Breed_base | inline |
getMeanFitness(age_idx age) | LCE_Selection_base | |
getMeanPatchFitness(age_idx age, unsigned int p) | LCE_Selection_base | |
GetOffsprgSex | LCE_Breed_base | private |
getOffsprgSex() | LCE_Breed_base | inline |
getOffsprgSexCloning() | LCE_Breed_base | inline |
getOffsprgSexFixed() | LCE_Breed_base | |
getOffsprgSexRandom() | LCE_Breed_base | inline |
getOffsprgSexSelfing() | LCE_Breed_base | inline |
getPoissonFecundity(double mean) | LCE_Breed_base | inline |
has_parameter(std::string name) | SimComponent | inlinevirtual |
init(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
LCE_Breed_base() | LCE_Breed_base | |
LCE_Breed_Selection() | LCE_Breed_Selection | |
LCE_Selection_base() | LCE_Selection_base | |
LifeCycleEvent(const char *name, const char *trait_link) | LifeCycleEvent | inline |
loadFileServices(FileServices *loader) | LCE_Breed_Selection | inlinevirtual |
loadStatServices(StatServices *loader) | LCE_Breed_Selection | virtual |
loadUpdaters(UpdaterServices *loader) | SimComponent | inlinevirtual |
makeOffspring(Individual *ind) | LCE_Breed_base | |
makeOffspringWithSelection(Individual *ind, unsigned int natalpatch) | LCE_Breed_Selection | |
MatingFuncPtr | LCE_Breed_base | private |
NonWrightFisherPopulation() | LCE_Breed_base | |
partialMonoginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialPolyginy(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialPolyginy_manyMales(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
partialSelfing(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
PopModelFuncPtr | LCE_Breed_base | protected |
random_hermaphrodite(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
RandomMating(Patch *thePatch, Individual *mother, unsigned int motherIndex) | LCE_Breed_base | inline |
removeAgeClass() | LCE_Breed_Selection | inlinevirtual |
requiredAgeClass() | LCE_Breed_Selection | inlinevirtual |
resetCounters() | LCE_Selection_base | |
resetParameterFromSource(std::string param, SimComponent *cmpt) | LCE_Breed_Selection | inlinevirtual |
set_event_name(std::string &name) | LifeCycleEvent | inlinevirtual |
set_event_name(const char *name) | LifeCycleEvent | inlinevirtual |
set_fit_model() | LCE_Selection_base | |
set_local_optima() | LCE_Selection_base | |
set_param_rate_of_change() | LCE_Selection_base | |
set_paramset(std::string name, bool required, SimComponent *owner) | LifeCycleEvent | inlinevirtual |
SimComponent::set_paramset(ParamSet *paramset) | SimComponent | inlinevirtual |
set_paramsetFromCopy(const ParamSet &PSet) | SimComponent | inlinevirtual |
set_pop_ptr(Metapop *popPtr) | LifeCycleEvent | inlinevirtual |
set_sel_model() | LCE_Selection_base | |
set_std_rate_of_change() | LCE_Selection_base | |
setFecundity() | LCE_Breed_base | |
setLocalOptima() | LCE_Selection_base | |
setMatingSystem() | LCE_Breed_base | |
setMeanFitness(age_idx age) | LCE_Selection_base | inline |
setMeans(unsigned int tot_ind) | LCE_Selection_base | |
setNonSelectedTraitTable() | LCE_Breed_Selection | |
setParameters() | LCE_Breed_Selection | virtual |
setReproScaledFitness_sum(sex_t SEX, valarray< double > &survival, unsigned int numReproFem, Patch *patch) | LCE_Breed_Selection | |
setScalingFactorAbsolute(age_idx age, unsigned int p) | LCE_Selection_base | inline |
setScalingFactorGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorMaxGlobal(age_idx age, unsigned int p) | LCE_Selection_base | |
setScalingFactorMaxLocal(age_idx age, unsigned int p) | LCE_Selection_base | |
setSelectionMatrix() | LCE_Selection_base | |
setSexRatio() | LCE_Breed_base | |
SimComponent() | SimComponent | inline |
WrightFisherPopulation() | LCE_Breed_base | |
~LCE_Breed_base() | LCE_Breed_base | inlinevirtual |
~LCE_Breed_Selection() | LCE_Breed_Selection | inlinevirtual |
~LCE_Selection_base() | LCE_Selection_base | virtual |
~LifeCycleEvent() | LifeCycleEvent | inlinevirtual |
~SimComponent() | SimComponent | inlinevirtual |